|
Inherited from _BlastConsumer:
end_alignment,
end_database_report,
end_descriptions,
end_header,
end_hsp,
end_parameters,
round,
start_header
Inherited from Bio.ParserSupport.AbstractConsumer:
__getattr__
Inherited from Bio.ParserSupport.AbstractConsumer (private):
_unhandled,
_unhandled_section
Inherited from _HeaderConsumer:
database_info,
query_info,
reference,
version
Inherited from _DescriptionConsumer:
converged,
description,
description_header,
model_sequences,
no_hits,
nonmodel_sequences,
start_descriptions
Inherited from _AlignmentConsumer:
length,
multalign,
start_alignment,
title
Inherited from _HSPConsumer:
align,
frame,
identities,
query,
sbjct,
score,
start_hsp,
strand
Inherited from _DatabaseReportConsumer:
database,
gapped,
ka_params,
ka_params_gap,
num_letters_in_database,
num_sequences_in_database,
posted_date,
start_database_report
Inherited from _ParametersConsumer:
blast_cutoff,
database_length,
dropoff_1st_pass,
effective_database_length,
effective_hsp_length,
effective_query_length,
effective_search_space,
effective_search_space_used,
frameshift,
gap_penalties,
gap_trigger,
gap_x_dropoff,
gap_x_dropoff_final,
hsps_gapped,
hsps_no_gap,
hsps_prelim_gapped,
hsps_prelim_gapped_attempted,
matrix,
num_extends,
num_good_extends,
num_hits,
num_seqs_better_e,
num_sequences,
query_length,
start_parameters,
threshold,
window_size
|
