|
start_parameters(self)
|
|
matrix(self,
line)
|
|
gap_penalties(self,
line)
|
|
num_hits(self,
line)
|
|
num_sequences(self,
line)
|
|
num_extends(self,
line)
|
|
num_good_extends(self,
line)
|
|
num_seqs_better_e(self,
line)
|
|
hsps_no_gap(self,
line)
|
|
hsps_prelim_gapped(self,
line)
|
|
hsps_prelim_gapped_attempted(self,
line)
|
|
hsps_gapped(self,
line)
|
|
query_length(self,
line)
|
|
database_length(self,
line)
|
|
effective_hsp_length(self,
line)
|
|
effective_query_length(self,
line)
|
|
effective_database_length(self,
line)
|
|
effective_search_space(self,
line)
|
|
effective_search_space_used(self,
line)
|
|
frameshift(self,
line)
|
|
threshold(self,
line)
|
|
window_size(self,
line)
|
|
dropoff_1st_pass(self,
line)
|
|
gap_x_dropoff(self,
line)
|
|
gap_x_dropoff_final(self,
line)
|
|
gap_trigger(self,
line)
|
|
blast_cutoff(self,
line)
|
|
end_parameters(self)
|
