Biskit.Mod.ModelMaster.ModelMaster

init(self, hosts, folders, fastaTarget=None, f_pir=None, template_folder=None, fout=None, starting_model=1, ending_model=10, ferror=None, verbose=1, **kw)
(Constructor)

Parameters:

hosts ([str]) - list of host-names
folders ([str]) - list of project directories (path)
fastaTarget (str) - path to find 'target.fasta'
f_pir (str) - alignment filename
template_folder (str) - directories for input atom files
fout (str) - default modeller input file 'modeller.top'
starting_model (int) - index of the first model (default: 1)
ending_model (int) - index of the last model (default: 10)
ferror (str) - filename to output errors from the Slave
verbose (1|0) - verbosity level (default: 1)

kw (param=value) - additional TrackingJobMaster arguments:

   chunk_size   - int, number of items that are processed per job
   niceness     - {str_host-name: int_niceness}
   slave_script - str, absolute path to slave-script
   show_output  - 1|0, display one xterm per slave [0]
   add_hosts    - 1|0, add hosts to PVM before starting [1]

Overrides: PVM.TrackingJobMaster.TrackingJobMaster.__init__

setupJobs(self)

source code

Prepare the job dictionnary for 'ModelSlave'

Returns: {{str}}: input informations for modeller for each project

getInitParameters(self, slave_tid)

source code

Hand over parameters to slave once.

Parameters:

slave_tid (int) - slave task id

Returns: {param:value}: dictionary with init parameters

Overrides: PVM.dispatcher.JobMaster.getInitParameters

cleanup(self)

source code

Called after exit. Override.

Overrides: PVM.TrackingJobMaster.TrackingJobMaster.cleanup: (inherited documentation)

done(self)

source code

Called by finish() after exit(), cleanup(), and reportProgress(), but before thread notification (notifyAll() ) and before executing the callBack method. Override.

Overrides: PVM.TrackingJobMaster.TrackingJobMaster.done: (inherited documentation)

slave_script

Value:

projectRoot()+ '/Biskit/Mod/ModelSlave.py'

Class ModelMaster

init(self, hosts, folders, fastaTarget=None, f_pir=None, template_folder=None, fout=None, starting_model=1, ending_model=10, ferror=None, verbose=1, **kw)
(Constructor)

__dir_or_none(self, folder, filename)

setupJobs(self)

getInitParameters(self, slave_tid)

cleanup(self)

done(self)

slave_script

Class ModelMaster

__init__(self, hosts, folders, fastaTarget=None, f_pir=None, template_folder=None, fout=None, starting_model=1, ending_model=10, ferror=None, verbose=1, **kw) (Constructor)

__dir_or_none(self, folder, filename)

setupJobs(self)

getInitParameters(self, slave_tid)

cleanup(self)

done(self)

slave_script

init(self, hosts, folders, fastaTarget=None, f_pir=None, template_folder=None, fout=None, starting_model=1, ending_model=10, ferror=None, verbose=1, **kw)
(Constructor)