Package Biskit :: Package Mod :: Module AlignerSlave :: Class AlignerSlave

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Class AlignerSlave

source code

See also: Aligner.py, AlignerMaster.py

Instance Methods

initialize(self, params)
Initialize AlignerSlave.

reportError(self, msg, d)
Report error.

[str] prepareT_coffee(self, input_file)
Prepare list of coordinate files (.alpha)

go(self, dict)
Run alignment job.

Method Details

initialize(self, params)

Initialize AlignerSlave.

Parameters:

params ({param:value}) - dictionary with init parameters

reportError(self, msg, d)

Report error.

Parameters:

msg (str) - error message
d (any) - error data

prepareT_coffee(self, input_file)

Prepare list of coordinate files (.alpha)

Parameters:

input_file (str) - file with list of .alpha files

Returns: [str]: list of file names

go(self, dict)

Run alignment job.

Parameters:

dict ({param:value}) - dictionary with run parameters